Are these fewatures just surfaces or actual geometry?
Have you tried using the knit command under the surfaces toolbar?
Can you post some images?
Any image or actual part will be helpful. You can upload the files on Uploading.com and paste the link here in case you've issues uploading here
Deepak and Scott,
Please look at the other discussion page - https://forum.solidworks.com/message/280441
I managed to upload it there. Hope I can get a solution soon.
Again, apologies for the inconvenience caused with multiple discussion threads.