(Before I start, I know that the part I am making, can be created using base flange and extrude cut too)
I have initially created the side profile and tried to use the jog option there and result was like this :
I assume when they will be manufacturing this one actually, results would be similar. I used delete face and patch to sort this one out.
But is there anything wrong I am doing while creating that jog so that this issue could have been resolved while creating job only...