one way to find the answer attached your files here, if you cannot upload the original one for some reason can you make a simple one which you can upload.
Cycle your part through the front, side and plan views. I suspect that you will see that the planes are through the origin and that you just have re-sized them along their appropriate axis. They are not moved, just re-sized.
If that is not the case, post your part.
Right-click on each plane in the Feature Manager and select Autosize