After some digging around, information left out was that the assembly had captured 4 new frame pieces
1 assembly, 4 models
4 models were deleted
Added 4 identical models from backup
"Uncaptured" deleted models
Captured new models.
I'm guessing this had some sort of placebo affect. In essence all the dimensions and features were identically named and built into the rules, but I guess Driveworks was not reading the new captured Models. It is still weird though because I still built new rules and captured dimensions from the cloned parts.
Anyways I created a new database with the current assembly and models and it works as intended.